An unusual recent expansion of the C-terminal domain of RNA polymerase II in primate malaria parasites features a motif otherwise found only in mammalian polymerases. Academic Article uri icon

Overview

MeSH

  • Amino Acid Sequence
  • Animals
  • Humans
  • Mammals
  • Molecular Sequence Data
  • Phylogeny
  • Primates
  • Sequence Alignment

MeSH Major

  • Evolution, Molecular
  • Plasmodium
  • Protein Structure, Tertiary
  • Protozoan Proteins
  • RNA Polymerase II

abstract

  • The tail of the enzyme RNA polymerase II is responsible for integrating the diverse events of gene expression in eukaryotes and is indispensable for life in yeast, fruit flies, and mice. The tail features a C-terminal domain (CTD), which is comprised of tandemly repeated Y(1)-S(2)-P(3)-T(4)-S(5)-P(6)-S(7) amino acid heptads that are highly conserved across evolutionary lineages, with all mammalian polymerases featuring 52 identical heptad repeats. However, the composition and function of protozoan CTDs remain less well understood. We find that malaria parasites (genus Plasmodium) display an unprecedented plasticity within the length and composition of their CTDs. The CTD in malaria parasites which infect human and nonhuman primates has expanded compared to closely related species that infect rodents or birds. In addition, this variability extends to different isolates within a single species, such as isolates of the human malaria parasite, Plasmodium falciparum. Our results indicate that expanded CTD heptads in malaria parasites correlates with parasitism of primates and provide the first demonstration of polymorphism of the RNA polymerase II CTD within a single species. The expanded set of CTD heptads feature lysine in the seventh position (Y(1)-S(2)-P(3)-T(4)-S(5)-P(6)-K(7)), a sequence only seen otherwise in the distal portion of mammalian polymerases. These observations raise new questions for the radiation of malaria parasites into diverse hosts and for the molecular evolution of RNA polymerase II.

publication date

  • June 2009

has subject area

  • Amino Acid Sequence
  • Animals
  • Evolution, Molecular
  • Humans
  • Mammals
  • Molecular Sequence Data
  • Phylogeny
  • Plasmodium
  • Primates
  • Protein Structure, Tertiary
  • Protozoan Proteins
  • RNA Polymerase II
  • Sequence Alignment

Research

keywords

  • Journal Article

Identity

Language

  • eng

PubMed Central ID

  • PMC3622039

Digital Object Identifier (DOI)

  • 10.1007/s00239-009-9245-2

PubMed ID

  • 19449052

Additional Document Info

start page

  • 706

end page

  • 714

volume

  • 68

number

  • 6