GPCR-OKB: the G Protein Coupled Receptor Oligomer Knowledge Base. Academic Article uri icon

Overview

abstract

  • SUMMARY: Rapid expansion of available data about G Protein Coupled Receptor (GPCR) dimers/oligomers over the past few years requires an effective system to organize this information electronically. Based on an ontology derived from a community dialog involving colleagues using experimental and computational methodologies, we developed the GPCR-Oligomerization Knowledge Base (GPCR-OKB). GPCR-OKB is a system that supports browsing and searching for GPCR oligomer data. Such data were manually derived from the literature. While focused on GPCR oligomers, GPCR-OKB is seamlessly connected to GPCRDB, facilitating the correlation of information about GPCR protomers and oligomers. AVAILABILITY AND IMPLEMENTATION: The GPCR-OKB web application is freely available at http://www.gpcr-okb.org

authors

  • Khelashvili, George
  • Dorff, Kevin
  • Shan, Jufang
  • Camacho-Artacho, Marta
  • Skrabanek, Lucy A
  • Vroling, Bas
  • Bouvier, Michel
  • Devi, Lakshmi A
  • George, Susan R
  • Javitch, Jonathan A
  • Lohse, Martin J
  • Milligan, Graeme
  • Neubig, Richard R
  • Palczewski, Krzysztof
  • Parmentier, Marc
  • Pin, Jean-Philippe
  • Vriend, Gerrit
  • Campagne, Fabien
  • Filizola, Marta

publication date

  • May 25, 2010

Research

keywords

  • Receptors, G-Protein-Coupled
  • Software

Identity

PubMed Central ID

  • PMC2894509

Scopus Document Identifier

  • 77954528981

Digital Object Identifier (DOI)

  • 10.1093/bioinformatics/btq264

PubMed ID

  • 20501551

Additional Document Info

volume

  • 26

issue

  • 14