A motif-based profile scanning approach for genome-wide prediction of signaling pathways Academic Article uri icon


MeSH Major

  • Genome
  • Signal Transduction


  • The rapid increase in genomic information requires new techniques to infer protein function and predict protein-protein interactions. Bioinformatics identifies modular signaling domains within protein sequences with a high degree of accuracy. In contrast, little success has been achieved in predicting short linear sequence motifs within proteins targeted by these domains to form complex signaling networks. Here we describe a peptide library-based searching algorithm, accessible over the World Wide Web, that identifies sequence motifs likely to bind to specific protein domains such as 14-3-3, SH2, and SH3 domains, or likely to be phosphorylated by specific protein kinases such as Src and AKT. Predictions from database searches for proteins containing motifs matching two different domains in a common signaling pathway provides a much higher success rate. This technology facilitates prediction of cell signaling networks within proteomes, and could aid in the identification of drug targets for the treatment of human diseases.

publication date

  • April 18, 2001



  • Academic Article



  • eng

Digital Object Identifier (DOI)

  • 10.1038/86737

PubMed ID

  • 11283593

Additional Document Info

start page

  • 348

end page

  • 53


  • 19


  • 4